Index

B

Binarization() (crosschat.CrossChatT.CrossChatT method)

C

Cluster_LRs() (crosschat.CrossChatH.CrossChatH method) Cluster_pathways() (crosschat.CrossChatH.CrossChatH method) crosschat.CrossChatH module

crosschat.CrossChatT module CrossChatH (class in crosschat.CrossChatH) CrossChatT (class in crosschat.CrossChatT)

D

Detect_active_pathways() (crosschat.CrossChatH.CrossChatH method) Detect_specific_LRs() (crosschat.CrossChatH.CrossChatH method) Detect_trees() (crosschat.CrossChatT.CrossChatT method) Detect_trees_S() (crosschat.CrossChatT.CrossChatT method) Draw_annotations_umap() (crosschat.CrossChatH.CrossChatH method) (crosschat.CrossChatT.CrossChatT method)

Draw_big_tree() (crosschat.CrossChatT.CrossChatT method) Draw_CCC() (crosschat.CrossChatH.CrossChatH method) Draw_CCC_between_MMT() (crosschat.CrossChatT.CrossChatT method) Draw_CCC_LR() (crosschat.CrossChatH.CrossChatH method) Draw_MMT() (crosschat.CrossChatT.CrossChatT method) Draw_MMT_lr_union() (crosschat.CrossChatT.CrossChatT method) Draw_multiscale_umap() (crosschat.CrossChatH.CrossChatH method)

F

find_interacting_trees() (crosschat.CrossChatT.CrossChatT method)

J

jaccard_dist() (crosschat.CrossChatH.CrossChatH method)

M

module crosschat.CrossChatH crosschat.CrossChatT

Multsicale_clustering() (crosschat.CrossChatH.CrossChatH method) Multsicale_clustering_spatial() (crosschat.CrossChatH.CrossChatH method)

P

plot_lr_frequency() (crosschat.CrossChatT.CrossChatT method)

prepare_adata() (crosschat.CrossChatH.CrossChatH method) (crosschat.CrossChatT.CrossChatT method)

S

select_partitions() (crosschat.CrossChatH.CrossChatH method)